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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10835334_10836177_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10835334 - 10836177
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATCTCTTCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAATC
Flanking Amino Acid:
LDYIDPDIMKKLEELEKEEE
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
100
1.24
0.5
100
0
Major PPT
65.2
0.34
1.1
68.3
36.7
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
68
0.55
1.4
76.77
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014423
10828809 - 10838800
9992