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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10836376_10836743_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10836376 - 10836743
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATTTCCTAACT
Flanking Amino Acid:
GPRMPRTAKKVQRKVLEKEM
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
93.2
21.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.7
0.87
0.7
83.5
31.6
Minor 5ss
29
-2.4
3.8
41.8
44.8
Minor BPS
67.6
0.63
1.7
82.78
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014423
10828809 - 10838800
9992