About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10838128_10838647_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10838128 - 10838647
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
RDVSGLRDEKMVKKVKTMAK
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
77.1
32.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.8
0.51
1
70.7
39.1
Minor 5ss
37.5
-1.4
2.4
42.6
44.3
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014423
10828809 - 10838800
9992