Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10843543_10844540_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10843543 - 10844540

Intron Length:

998

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

AAACTTCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATACAT

U12 Branch Point Sequence:

CTAACTGAAACT

Flanking Amino Acid:

QRSNAKITFPDCFTNTCCSH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

1.1

82.6

30.6

Major BPS

74.9

0.62

81.3

29.9

Major PPT

73.5

0.53

0.9

66.4

39.5

Minor 5ss

39.2

-1.2

2.7

51.6

44.8

Minor BPS

-0.3

2.3

64.8

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013603

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014184

10841987 - 10845765

3779

ENSAPLT00000019152

10840705 - 10846223

5519