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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10845766_10846056_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10845766 - 10846056
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CGTTGTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
GTCCCGTTGTCC
Flanking Amino Acid:
ALRGNWARALSTVTAMPEVS
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
73.2
0.52
0.9
69.6
36.8
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
36.3
-1.1
3.7
55.79
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013603
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019152
10840705 - 10846223
5519