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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10855472_10856164_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10855472 - 10856164
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTGGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTCCCTTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
63.5
0.31
1.1
58
43.1
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
65
0.55
1.4
75.53
40.8

Associated Gene:

Gene:
WDR37
Ensembl Gene ID:
ENSAPLG00000013177
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036292
10855440 - 10888741
33302