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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10855472_10858506_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10855472 - 10858506
Intron Length:
3035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
CGCTTGTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGACATTTAACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
67.6
0.4
0.9
65.1
36.3
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
56.6
0.07
1.6
59.9
41.3

Associated Gene:

Gene:
WDR37
Ensembl Gene ID:
ENSAPLG00000013177
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013750
10855440 - 10888741
33302