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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10856285_10858506_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10856285 - 10858506
Intron Length:
2222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CGCTTGTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGACATTTAACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
67.6
0.4
0.9
65.1
36.3
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
56.6
0.07
1.6
59.9
41.3

Associated Gene:

Gene:
WDR37
Ensembl Gene ID:
ENSAPLG00000013177
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036292
10855440 - 10888741
33302