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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108606580_108607473_R

Intron Information:

Intron Rank:
149475
Intron Class:
major
Intron Phase:
Intron Coordinates:
108606580 - 108607473
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGATG
5'SS Class:
major
3'SS Sequence:
TTAATTTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GGATCCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
67.8
42.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.5
0.64
0.8
74.2
36.2
Minor 5ss
42.1
-0.9
3.1
53.6
44.9
Minor BPS
82.4
1.09
1.1
87.15
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027909
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043230
108604688 - 108607985
3298