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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108637706_108637790_R

Intron Information:

Intron Rank:
153750
Intron Class:
major
Intron Phase:
Intron Coordinates:
108637706 - 108637790
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTAACTTTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
72.8
0.51
0.8
70.6
35.8
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
60
0.31
1.4
69.01
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030211
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040333
108637540 - 108644690
7151