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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10870467_10872834_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10870467 - 10872834
Intron Length:
2368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTACACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTGTTTTACAC
Flanking Amino Acid:
LVKYAGHVGSVNSIKFHPTE
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
80.2
0.68
0.9
76.6
36.7
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
51.1
0.01
1.8
66.32
39.9

Associated Gene:

Gene:
WDR37
Ensembl Gene ID:
ENSAPLG00000013177
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036292
10855440 - 10888741
33302
ENSAPLT00000013750
10855440 - 10888741
33302