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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1087110_1093725_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1087110 - 1093725
Intron Length:
6616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ACCCCATTGATC
Flanking Amino Acid:
YLWGFTLFGWGLPAVFVTAW
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
48.8
-0.1
1.6
54.32
37.8

Associated Gene:

Gene:
PTH1R
Ensembl Gene ID:
ENSAPLG00000005598
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005825
991927 - 1103775
111849