About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10872880_10874588_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
10872880 - 10874588

Intron Length:
1709

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACGTACA

5'SS Class:
strong_major

3'SS Sequence:
TTTCCCTCTGCAG|C

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CCTCCAT

U12 Branch Point Sequence:
CCCCCCTCCATT

Flanking Amino Acid:
FHPTEQVALTASGDQTAHIW

Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
87.4
0.88
0.9
80.9
33.4

Major BPS
52.4
0.06
1.3
64
41.7

Major PPT
86.5
0.82
0.7
81.3
23.7

Minor 5ss
34.9
-1.7
2.8
43.6
43.5

Minor BPS
45.2
-0.3
2
56.83
46.2

Associated Gene:

Gene:
WDR37

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10855440 - 10888741
33302

10855440 - 10888741
33302