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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108780489_108780671_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108780489 - 108780671
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TATCCAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCC
Flanking Amino Acid:
IRKNVKDAIVTIVSAMSTLI
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
69.6
0.44
0.9
60.2
40.2
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
60.8
0.32
1.7
73.08
38.7

Associated Gene:

Gene:
GNAL
Ensembl Gene ID:
ENSAPLG00000012611
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034306
108706884 - 108782332
75449
ENSAPLT00000013181
108706884 - 108898372
191489