About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108780792_108782293_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108780792 - 108782293
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTACAAAAAT
Flanking Amino Acid:
APLSDFDYTQKLSVSGKTEV
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.6
0.82
0.7
83.2
25.1
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
49.4
0.04
2.2
79.59
41.7

Associated Gene:

Gene:
GNAL
Ensembl Gene ID:
ENSAPLG00000012611
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034306
108706884 - 108782332
75449