About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108780792_108842969_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108780792 - 108842969
Intron Length:
62178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GTTCTCTTATTT
Flanking Amino Acid:
APLSDFDYTQEFFEHAKKLW
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
80.6
0.69
0.8
77.2
35.6
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
62.3
0.47
1.6
77.8
38.7

Associated Gene:

Gene:
GNAL
Ensembl Gene ID:
ENSAPLG00000012611
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013181
108706884 - 108898372
191489