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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10885679_10886072_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10885679 - 10886072
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGCATAACC
Flanking Amino Acid:
ATIRTDSAVNRINVCVGQRI
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.5
0.62
0.9
72.8
36.5
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
60.4
0.31
2.1
76.47
39.3

Associated Gene:

Gene:
WDR37
Ensembl Gene ID:
ENSAPLG00000013177
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036292
10855440 - 10888741
33302
ENSAPLT00000013750
10855440 - 10888741
33302