About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10886188_10887674_F


Intron Information:

Intron Rank:
13

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
10886188 - 10887674

Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAACTGAA

5'SS Class:
strong_major

3'SS Sequence:
CAAACTGTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TACTGAT

U12 Branch Point Sequence:
TTTGTTGTAAGC

Flanking Amino Acid:
LARLPRSNRQGHRRMVCCSA

Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.7
0.77
1.1
77.6
32.8

Major BPS
83.5
0.83
0.8
71.6
36.4

Major PPT
65.6
0.35
1
57.6
42.5

Minor 5ss
37.5
-1.4
3.2
49
47.2

Minor BPS
46.7
-0.2
2.3
64.58
42.1

Associated Gene:

Gene:
WDR37

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10855440 - 10888741
33302

10855440 - 10888741
33302