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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108890266_108891143_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108890266 - 108891143
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
GGCTTTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
GGCTTTTTAACA
Flanking Amino Acid:
TRFQVDKVNFHMFDVGGQRD
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
69.1
0.48
1
70
32.1
Major PPT
73.6
0.53
1
68.9
40.8
Minor 5ss
40
-1.1
3
55.9
42.3
Minor BPS
67.7
0.55
1.2
68.06
38.5

Associated Gene:

Gene:
GNAL
Ensembl Gene ID:
ENSAPLG00000012611
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013181
108706884 - 108898372
191489