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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108894282_108898225_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108894282 - 108898225
Intron Length:
3944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TCTGTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
AACTCCTTACCA
Flanking Amino Acid:
AKFFIRDEFLRISTASGDGR
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
0.9
78.6
29.9
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
81
0.7
0.8
75.9
32.8
Minor 5ss
33.8
-1.8
2.9
44
38.6
Minor BPS
66.2
0.5
1.6
70.9
41.2

Associated Gene:

Gene:
GNAL
Ensembl Gene ID:
ENSAPLG00000012611
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013181
108706884 - 108898372
191489