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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108903561_108904324_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108903561 - 108904324
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTATACA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGTGCTTTACCA
Flanking Amino Acid:
DVLSQEASQKLLWWFRPRLI
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
67.8
36.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
37.8
-1.4
2.4
44.3
43
Minor BPS
60.8
0.34
1.7
71.5
41.1

Associated Gene:

Gene:
MPPE1
Ensembl Gene ID:
ENSAPLG00000012473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013004
108901125 - 108910026
8902