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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108905675_108907493_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108905675 - 108907493
Intron Length:
1819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
ACTTCTTTCTCC
Flanking Amino Acid:
SGKLITRKGINFVVVNSVAM
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
78.2
0.64
1
69.2
46.1
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
42.2
-0.6
3.5
63.92
42.3

Associated Gene:

Gene:
MPPE1
Ensembl Gene ID:
ENSAPLG00000012473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013004
108901125 - 108910026
8902