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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108908503_108908823_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108908503 - 108908823
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCTTCATTT
Flanking Amino Acid:
FDEGKWSSPQAWADDVRRFR
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
82.8
0.74
0.9
78.3
34.9
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
58.3
0.34
1.8
78.39
38.4

Associated Gene:

Gene:
MPPE1
Ensembl Gene ID:
ENSAPLG00000012473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013004
108901125 - 108910026
8902