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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108929273_108933629_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108929273 - 108933629
Intron Length:
4357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
AATTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GATTTGTGAAAT
Flanking Amino Acid:
AVQLALRAGQIIRKALTEEK
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
81.7
0.71
0.8
78.2
35.3
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
47
-0.1
2.2
68.07
42.1

Associated Gene:

Gene:
IMPA2
Ensembl Gene ID:
ENSAPLG00000021120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029183
108928919 - 108947946
19028