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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108940656_108943008_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
108940656 - 108943008
Intron Length:
2353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CAAAATCTTAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTCAAAATC
Flanking Amino Acid:
VSIGFAVNKELEFGVIYHCT
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.4
41.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
55.1
0.12
1.1
52.3
41.1
Minor 5ss
47.2
-0.3
2.6
66.5
44.6
Minor BPS
50
-0
1.9
66.2
40.2

Associated Gene:

Gene:
IMPA2
Ensembl Gene ID:
ENSAPLG00000021120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029183
108928919 - 108947946
19028