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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108943118_108946552_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108943118 - 108946552
Intron Length:
3435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTCTA
5'SS Class:
major
3'SS Sequence:
ACCTACTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AACTGTTGAATT
Flanking Amino Acid:
DKRLQVSKETDISKALILTE
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
70.1
42
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.1
0.59
0.9
69.1
36
Minor 5ss
32.8
-2
3.1
41.5
44.9
Minor BPS
48.6
-0
1.8
63.93
41

Associated Gene:

Gene:
IMPA2
Ensembl Gene ID:
ENSAPLG00000021120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029183
108928919 - 108947946
19028