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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108946662_108946815_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108946662 - 108946815
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCCTCTTTACAT
Flanking Amino Acid:
IERLLKAQAHGVRVIGSSTL
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.4
0.5
0.9
71.1
39
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
57.4
0.31
1.8
72.3
45

Associated Gene:

Gene:
IMPA2
Ensembl Gene ID:
ENSAPLG00000021120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029183
108928919 - 108947946
19028