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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108946968_108947830_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108946968 - 108947830
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATTAACC
Flanking Amino Acid:
EAGGTVIDTSGGPLDLMSCR
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.1
0.72
0.8
80.5
31.5
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
70.9
0.64
1.6
79.01
36.3

Associated Gene:

Gene:
IMPA2
Ensembl Gene ID:
ENSAPLG00000021120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029183
108928919 - 108947946
19028