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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108966967_108970277_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108966967 - 108970277
Intron Length:
3311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTATAACT
Flanking Amino Acid:
GARGYVGSAVRSLVSMGASV
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.6
0.62
0.9
77.3
36.7
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
69.7
0.7
1.5
86.83
32.2

Associated Gene:

Gene:
CIDEA
Ensembl Gene ID:
ENSAPLG00000011917
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012404
108966929 - 108976133
9205