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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108991554_108991846_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108991554 - 108991846
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
CAGCACTGAGCC
Flanking Amino Acid:
GQCGNQIGTKFWEVISDEHG
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
73.3
0.53
0.7
66
30.2
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
42.9
-0.5
1.8
47.35
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012331
108991200 - 108998790
7591