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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_108991956_108993075_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108991956 - 108993075
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TTTTGGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTAACATTAAGC
Flanking Amino Acid:
RINVYYNESSSQKFVPRAVL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
59.1
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.8
80.6
37
Minor 5ss
30.5
-2.2
3.2
42.5
44.2
Minor BPS
55.7
0.16
2
69.59
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012331
108991200 - 108998790
7591