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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109004388_109005207_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109004388 - 109005207
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTAAC
U12 Branch Point Sequence:
TGTGACGTAACT
Flanking Amino Acid:
LTEKKAEVEKVALRLLEKEV
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
53.1
0.08
1.2
55.3
37.9
Major PPT
82
0.72
0.8
73.1
37.3
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
51.8
0.13
2.3
77.67
44.4

Associated Gene:

Gene:
AFG3L2
Ensembl Gene ID:
ENSAPLG00000011183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011680
109003371 - 109027121
23751