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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109008142_109008694_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109008142 - 109008694
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATCAAAT
Flanking Amino Acid:
FEQAIERVIGGLEKKTQVLQ
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.3
0.5
1.1
74.7
39
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
48.7
-0
2
73.93
41.6

Associated Gene:

Gene:
AFG3L2
Ensembl Gene ID:
ENSAPLG00000011183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011680
109003371 - 109027121
23751