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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109013772_109014344_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109013772 - 109014344
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCAAG
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTCTTCTCGAGG
Flanking Amino Acid:
YEDLGAKIPKGAILTGPPGT
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.8
43.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
89.9
0.9
0.7
84.9
29.9
Minor 5ss
44.3
-0.6
2.7
56.9
47.4
Minor BPS
48.3
-0.2
1.9
57.91
44.3

Associated Gene:

Gene:
AFG3L2
Ensembl Gene ID:
ENSAPLG00000011183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011680
109003371 - 109027121
23751