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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109023294_109023751_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109023294 - 109023751
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTTCTTGATA
Flanking Amino Acid:
CRRLFSQPPKGFEKYFPNGK
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.3
0.64
0.9
76.3
32.4
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
74.3
0.76
1.1
77.25
33.8

Associated Gene:

Gene:
AFG3L2
Ensembl Gene ID:
ENSAPLG00000011183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011680
109003371 - 109027121
23751