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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109023852_109027007_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109023852 - 109027007
Intron Length:
3156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATATTTATTT
Flanking Amino Acid:
LLAARPGLLQFREEVTSGVT
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
100
1.24
0.5
100
0
Major PPT
87.6
0.85
0.7
85.1
29.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
58.5
0.35
1.7
77.58
39.2

Associated Gene:

Gene:
AFG3L2
Ensembl Gene ID:
ENSAPLG00000011183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011680
109003371 - 109027121
23751