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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109029143_109029531_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109029143 - 109029531
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGATTT
5'SS Class:
major
3'SS Sequence:
TCTTCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTCTTCACT
Flanking Amino Acid:
EWGLPSIVKAILGTSRTLTY
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
74.6
36.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.7
0.78
0.7
81.7
29.1
Minor 5ss
51.7
0.06
2.8
74.3
41.9
Minor BPS
72
0.77
1.7
86.99
39.2

Associated Gene:

Gene:
PRELID3A
Ensembl Gene ID:
ENSAPLG00000010888
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011342
109027358 - 109035625
8268