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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109030436_109030528_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109030436 - 109030528
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTCTCTTTATTC
Flanking Amino Acid:
VYTPHPENPEKTVLTQEAII
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
86.6
0.82
0.7
80.7
31
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
66.2
0.49
1.6
73.5
38.4

Associated Gene:

Gene:
PRELID3A
Ensembl Gene ID:
ENSAPLG00000010888
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011342
109027358 - 109035625
8268