Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109030632_109035511_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109030632 - 109035511

Intron Length:

4880

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTATC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCTTGGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TGATCCTAAATT

Flanking Amino Acid:

ANTISSNARKGRDALEWVIS

Intron Amino Acid Position:

156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.8

83.1

28.7

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

80.4

0.68

77.6

36.1

Minor 5ss

40.9

-1

2.7

53.5

43.9

Minor BPS

68.9

0.67

1.6

81.66

39.9

Associated Gene:

Gene:

PRELID3A

Ensembl Gene ID:

ENSAPLG00000010888

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011342

109027358 - 109035625

8268