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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109045593_109046447_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109045593 - 109046447
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
AAATAGTGAGAT
Flanking Amino Acid:
SHHRSLRSMPRLASRSKSVD
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
88.2
0.86
0.7
85.4
29.3
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
36.9
-0.9
2.2
52.45
41.1

Associated Gene:

Gene:
SPIRE1
Ensembl Gene ID:
ENSAPLG00000010595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039881
109045334 - 109167550
122217
ENSAPLT00000011033
109045334 - 109167550
122217