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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109046585_109046673_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109046585 - 109046673
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTGTTCTCAACA
Flanking Amino Acid:
RPVCSQCCKKMRLPSKPYST
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
80
0.75
1
78.6
31
Major PPT
74.2
0.55
0.9
69.9
35.4
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
64.4
0.45
1.6
70.88
41.7

Associated Gene:

Gene:
SPIRE1
Ensembl Gene ID:
ENSAPLG00000010595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039881
109045334 - 109167550
122217
ENSAPLT00000011033
109045334 - 109167550
122217