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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109055844_109060077_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109055844 - 109060077
Intron Length:
4234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTCTGAGGAATT
Flanking Amino Acid:
LAELDSSDSEEESVHKSTSS
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
77
0.61
0.9
72.3
32.5
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
41
-0.6
2.5
65.49
45.3

Associated Gene:

Gene:
SPIRE1
Ensembl Gene ID:
ENSAPLG00000010595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011033
109045334 - 109167550
122217
ENSAPLT00000039881
109045334 - 109167550
122217