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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109088494_109110886_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109088494 - 109110886
Intron Length:
22393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTTTGTAATT
Flanking Amino Acid:
AIHSYKDVMKLCAAHLPTRS
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
88.3
0.86
0.6
82.1
30
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
58.3
0.34
2
78.42
39.1

Associated Gene:

Gene:
SPIRE1
Ensembl Gene ID:
ENSAPLG00000010595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039881
109045334 - 109167550
122217
ENSAPLT00000011033
109045334 - 109167550
122217