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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109111124_109156999_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109111124 - 109156999
Intron Length:
45876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACTT
Flanking Amino Acid:
SDRLHCTEMEVIESLGIIIY
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85
0.79
0.7
80.5
31.5
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
63.8
0.51
1.6
78.3
39.3

Associated Gene:

Gene:
SPIRE1
Ensembl Gene ID:
ENSAPLG00000010595
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039881
109045334 - 109167550
122217
ENSAPLT00000011033
109045334 - 109167550
122217