About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109171175_109172458_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109171175 - 109172458
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTGATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTTTCTGATCA
Flanking Amino Acid:
ITFWESLTGHRYIHRPINPD
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
74.3
0.55
1
74.5
40.1
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
59.5
0.3
1.7
72.83
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010630
109168508 - 109181974
13467