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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109176720_109177388_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109176720 - 109177388
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTTCTTACCT
Flanking Amino Acid:
TLSPEITNTQFTLERQRTAE
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.7
0.76
0.8
78.1
29.5
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
75
0.86
1.5
89.83
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010630
109168508 - 109181974
13467