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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109179392_109180438_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
109179392 - 109180438
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTAATAATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTGGTTTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
64.6
0.33
1.1
59.8
44.7
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
54.7
0.14
1.9
66.01
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010630
109168508 - 109181974
13467