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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109180627_109181062_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
109180627 - 109181062
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
TCTTTACCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
GTATCTTTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.6
37.4
Major BPS
74
0.6
1
65.6
41.1
Major PPT
84.9
0.78
0.7
82.2
28.6
Minor 5ss
48.3
-0.1
2.4
60.9
38.1
Minor BPS
68.2
0.65
1.6
81.48
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010630
109168508 - 109181974
13467