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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109181145_109181818_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
109181145 - 109181818
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
ATTATGATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AGTGTCTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
73.6
0.53
1
63.3
46.5
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
69.2
0.68
1.3
78.48
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010185
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010630
109168508 - 109181974
13467