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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_109182531_109184020_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109182531 - 109184020
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
GATTCTGTAACT
Flanking Amino Acid:
PELQGFTLLMPAVSVGNVGQ
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
38.5
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
85.8
0.81
0.8
79.9
31.4
Minor 5ss
39.1
-1.2
3.4
53.8
44.4
Minor BPS
63.9
0.52
2
81.83
39.6

Associated Gene:

Gene:
PSMG2
Ensembl Gene ID:
ENSAPLG00000010098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010532
109182474 - 109190786
8313